Skip to content
View torognes's full-sized avatar
164 followers · 35 following

Achievements

Achievement: Pull SharkAchievement: Starstruckx3Achievement: QuickdrawAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull SharkAchievement: Starstruckx3Achievement: QuickdrawAchievement: Arctic Code Vault Contributor

Highlights

  • Pro

Organizations

@uio-bmi @ous-mik

Block or report torognes

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
torognes/README.md

Hi

  • I’m working on improving the tools VSEARCH and Swarm for microbiome bioinformatics.
  • I’m often thinking about new ideas for how we can use clever algorithms and data structures to improve bioinformatics tools.
  • I'm teaching the course IN4030 Introduction to bioinformatics at the University of Oslo every spring semester.
  • I'm also involved in various projects at Oslo University Hospital (OUS), including Publika, a publication database for OUS.

Pinned Loading

  1. vsearch vsearch Public

    Versatile open-source tool for microbiome analysis

    C++ 749 137

  2. swarm swarm Public

    A robust and fast clustering method for amplicon-based studies

    C++ 147 23

  3. swipe swipe Public

    Smith-Waterman database searches with inter-sequence SIMD parallelisation

    C++ 61 21

  4. uio-bmi/compairr uio-bmi/compairr Public

    Comparison of Adaptive Immune Receptor Repertoires

    C++ 30 7