A Tool to Annotate and Prioritize Exome Variants

An NLP framework for clinical phenotyping. Docker | Python | Solr | OMOP. http://claritynlp.readthedocs.io/en/latest/

Repository for the GA4GH phenopacket schema

API for linked biological knowledge

ProCyon: A multimodal foundation model for protein phenotypes

PATO - the Phenotype And Trait Ontology

Learn interpretable computational phenotyping models from k-merized genomic data

A phenotype-based tool for variant prioritization in WES and WGS data

Flexible analysis of high-content CRISPR screening

source files for OBA (Ontology of Biological Attributes)

R package for epigraphdb

phenol: Phenotype ontology library

Software program for generating synthetic datasets for genotypes and phenotypes

ComptoxAI - An artificial Intelligence toolkit for computational toxicology

Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.

Internationalisation of the HPO content

Fission Yeast Phenotype Ontology

Crossmapped phenotype ontologies for the oncology domain

This is a set of useful tools for using, creating, validating and generally working with Codelists in Health Research. The tools are in Rust with Python and R bindings so they can be used in any of the 3 languages.