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Achievement: QuickdrawAchievement: YOLOAchievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

Achievements

Achievement: QuickdrawAchievement: YOLOAchievement: Starstruckx2Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2

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@RNA-Puzzles

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mmagnus/README.md

🎓 Ph.D., Computational RNA biologist at Harvard University, USA

I'm trying to understand the evolution and role of RNA and RNPs in biological systems using computational methods (machine learning, molecular dynamics, structure prediction) and experimental (yeast genetics) and codify this knowledge into predictive computational models that can be applied for future RNA therapeutics.

https://mmagnus.github.io

Key papers:

  • Rearrangements within the U6 snRNA core at the transition between the two catalytic steps of splicing with Konarska @IMOL, Poland, 2019
  • RNA 3D Structure Prediction Using Multiple Sequence Alignment Information with Das and Bujnicki @ Stanford University, USA & IIMCB, Poland, 2019
  • RNA-Puzzles toolkit: A computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation tools with the RNA-Puzzle Team @ IIMCB & IMOL, Poland, 2020 & the server https://rna-tools.online 2022
  • RNA 3D structure prediction using Deep learning, with Rivas, @Harvard, US, 2023- https://rnahub.org

RNA https://github.com/mmagnus?tab=repositories&q=rna&type=&language=&sort

Emacs https://github.com/mmagnus?tab=repositories&q=emacs&type=&language=&sort

See my projects @Github https://github.com/mmagnus?tab=repositories&q=&type=&language=&sort=stargazers

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  1. rna-tools rna-tools Public

    🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online

    Jupyter Notebook 185 47

  2. rna-structure-playground rna-structure-playground Public

    a repository with hands-on examples demonstrating practical RNA analysis workflows and basic rna-tools (not only) usage, aimed at education and reproducible tutorials.

    Jupyter Notebook

  3. rnahub rnahub Public

    RNAhub: a program behind rnahub.org that identifies conserved RNA structures in genomes.

    Python 5

  4. EmacsOrgModeClockingXBar EmacsOrgModeClockingXBar Public

    see what you are working on with XBar, Conky ;-) [if using emacs/orgmode/clocking] + alternatives

    Python 12 1

  5. awesome-rna-3D-tools awesome-rna-3D-tools Public

    awesome tools for RNA

    17

  6. geekbook geekbook Public

    G33KB00K3 - fun to read & fun to write -- 🤓 eXtreme eXtendable note taking system for nerds/geeks (including scientists!) docs: http://geekbook.rtfd.io = beautiful html generator of your markdown-b…

    Python 46 7